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Shopify & Payment Reconciliation

Shopify Sales Should Match the Money Moving Through Your Business

Shopify may show one sales number, your payment processor may show another, and your bank deposit may be different again. Fees, refunds, chargebacks, sales tax, and payout timing can all create differences that are easy to record incorrectly.

We reconcile Shopify and payment processor activity so sales, fees, refunds, payouts, and deposits are recorded properly in QuickBooks and your reports better reflect what actually happened.

What We Help Fix

  • Shopify payouts that do not match QuickBooks
  • Stripe, PayPal, and Shop Pay differences
  • Merchant fees recorded incorrectly
  • Refunds and chargebacks
  • Duplicate payout transactions
  • Sales tax mixed into revenue
  • Clearing accounts that do not clear
  • Deposits recorded as total sales

What You Get

Depending on the project, your reconciliation may include:

  • Shopify sales and payout review
  • Payment processor reconciliation
  • Corrected fees and refund activity
  • Cleaned-up clearing accounts
  • Corrected payout and deposit entries
  • Updated financial reports

How It Works

1. We Review

We compare Shopify, payment processors, bank deposits, and QuickBooks to see where the numbers stop agreeing.

2. We Reconcile

We trace sales, fees, refunds, chargebacks, payouts, and deposits and correct the activity included in the project.

3. We Explain It

You receive updated records and a clear explanation of the major issues we found and corrected.

Shopify payouts can include fees, refunds, sales tax, chargebacks, and timing differences. The amount deposited into your bank is not always the same as total sales.

Depending on your setup, we may review Stripe, PayPal, Shop Pay, Klarna, Afterpay, and other processors connected to your eCommerce activity.

Yes. We can review historical Shopify and processor activity when it is included in the project scope.

Shopify is our primary eCommerce focus, but we may also review other sales or payment platforms when they are part of your QuickBooks setup.